htSNPs from the ACE data set: 90% variance /diversity explained
[skip the colorful table]
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00334 |
02400 |
02547 |
03872 |
04504 |
05406 |
05492 |
05878 |
06435 |
07831 |
08128 |
08968 |
09191 |
09222 |
10514 |
10527 |
10578 |
10696 |
10758 |
10979 |
11159 |
11376 |
11405 |
11447 |
11478 |
11618 |
11663 |
11866 |
12257 |
12486 |
12727 |
13145 |
13230 |
13336 |
13338 |
14094 |
14480 |
14488 |
14521 |
15214 |
15435 |
17634 |
18030 |
18222 |
18912 |
20120 |
20833 |
22155 |
22251 |
22982 |
23152 |
23945 |
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| C08.1(H1) |
0 |
1 |
1 |
0 |
1 |
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1 |
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1 |
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1 |
0 |
0 |
C08.1(H1) |
| C08.2(H6) |
0 |
0 |
0 |
1 |
0 |
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1 |
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1 |
C08.2(H6) |
| C09.1(H1) |
0 |
1 |
1 |
0 |
1 |
0 |
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0 |
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1 |
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1 |
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C09.1(H1) |
| C09.2(H1) |
0 |
1 |
1 |
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1 |
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C09.2(H1) |
| C21.1(H6) |
0 |
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0 |
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1 |
C21.1(H6) |
| C21.2(H7) |
0 |
0 |
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1 |
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1 |
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C21.2(H7) |
| C22.1(H6) |
0 |
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1 |
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1 |
C22.1(H6) |
| C22.2(H7) |
0 |
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C22.2(H7) |
| C23.1(H6) |
0 |
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C23.1(H6) |
| C23.2(H9) |
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C23.2(H9) |
| C24.1(H1) |
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C24.1(H1) |
| C24.2(H7) |
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C24.2(H7) |
| S01.1(H2) |
0 |
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S01.1(H2) |
| S01.2(H3) |
0 |
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1 |
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S01.2(H3) |
| S02.1(H4) |
1 |
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S02.1(H4) |
| S02.2(H5) |
1 |
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1 |
S02.2(H5) |
| S03.1(H11) |
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S03.1(H11) |
| S03.2(H10) |
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S03.2(H10) |
| S04.1(H1) |
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S04.1(H1) |
| S04.2(H8) |
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1 |
S04.2(H8) |
| S05.1(H13) |
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S05.1(H13) |
| S05.2(H12) |
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Greedy discard method
htSNPs selected and alternatives:
43 [14, 18, 20, 21, 23, 24, 26, 27, 28, 29, 31, 33, 34, 35, 36, 37, 39]
40 [7, 42, 47]
10 [22]
12 [13]
32 [38]
Varimax rotation method
htSNPs selected:
[9, 10, 13, 40, 43]
Sliding window method
htSNPs selected:
[4, 5, 6, 7, 9, 10, 12, 16, 25, 26, 41, 44, 46, 47, 50]
htstep method
htSNPs selected (step-up):
[0, 3, 4, 5, 11, 41, 51]
htSNPs selected (step-down):
[9, 13, 25, 41, 43, 49, 51]
